Category Archives: Biomedical knowledge bases and infrastructures

DC-RESEARCH.EU

Posted on November 23, 2010 by sgtp

DC-RESEARCH.EU is a system that aims at representing the communication and know-how proper of a research networks. DC-RESEARCH.EU has been developed in the context of the network DC-THERA by Leaf Bioscience s.r.l., in collaboration with other participants in the network. DC-RESEARCH.EU stores synthetic … Continue reading →

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PHI-Base

Posted on November 23, 2010 by sgtp

I am involved in the re-design of the Host Pathogen Interaction database PHI-BASE, where I have devised a new information model and a new database schema. Rather than focusing on “storing” the data, the new information model makes explicit the … Continue reading →

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The Genopolis Microarray Database

Posted on November 13, 2010 by sgtp

The Genopolis Microarray Database originated as custom microarray database project for Affymetrix GeneChip data, supporting an homogeneous community studying dendritic cells differentiation. It is based on an object model MAGEcompliant, and provides support for MIAME annotation, export to ArrayExpress as … Continue reading →

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Beat

Posted on November 13, 2007 by sgtp

Beat is platform for the matching and enrichment of ontologies, which was first implemented in the context of the Bootstrep project. It was aimed at providing a platform where several tasks related to ontology alignment/enrichment can be modularly composed. I … Continue reading →

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