Tag Archives: BioPAX


I’ve been involved since 2005 with BioPAX, which I first approached in search a suitable knowledge base to develop pathway analysis methods. I have been mostly focused on “consuming” BioPAX, which has meant debugging of the specification and some tools … Continue reading

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Semantic Web/Linking/CV WorkGroup: next steps ?

Talk @COMBINE meeting, on next step of the BioPAX SemWeb Working Group. Edinburgh, Thursday October 7th, 2010. Info and slides are available here.

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The BioPAX community standard for pathway data sharing

The BioPAX community standard for pathway data sharing Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Vastrik, Guanming Wu, Peter D’Eustachio, Carl Schaefer, Joanne Luciano, Frank Schacherer, Irma Martinez-Flores, Zhenjun Hu, Veronica Jimenez-Jacinto, Geeta Joshi-Tope, Kumaran … Continue reading

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